Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019054
Fusion event
HBV-TCERG1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
End
145876760/146497197 (Hg38)
Location type
Intron15
Target gene
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-877-3p ; hsa-mir-769-5p ; hsa-mir-615-3p ; hsa-mir-328-3p ; hsa-mir-222-3p ; hsa-let-7a-5p ; hsa-mir-299-5p ; hsa-mir-296-3p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-3163 ; hsa-mir-5701 ; hsa-mir-29b-2-5p ; hsa-mir-4703-3p ; hsa-mir-5011-5p ; hsa-mir-5000-5p ; hsa-mir-410-3p ; hsa-mir-6868-3p ; hsa-mir-1283 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418
Nearest miRNA
hsa-mir-10397/Upstream/2817226; hsa-mir-103a-1/Downstream/2565116;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/49330, chr5-CpG: 97/Downstream/380586
Upstream sequence
tgcacgctagcctgggtagcagagtgagaccttatctttaaaaaaaaagaagaaaggaaaaCTTTAAAAAAAGAACGTAGCTTAATACTTAGAAGGATTT
Downstream sequence
ggccttgctctgttgtccaggctggagtgcagtggcacgatctcggctctacagcctttgcctcccaggttcaaaagattattttgcctcagcttctcaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.