Basic Information
VIS ID
TVIS10019055
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37.55
Start
92106341/91396623 (Hg38)
End
92106341/91396623 (Hg38)
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/1083790; hsa-mir-1202/Downstream/125037;
Nearest TSS
ENST00000381078/Upstream/3623; ENST00000452624/Downstream/293805;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/785123, chr6-CpG: 92/Downstream/2019931
Nearby gene
MIR4643
Upstream sequence
CAATGTCAGACAGCAGGAGCCGGAGCCCAGGGAGGAAACCAGATGGAAAGGGCTCTGCTCAGACCGGCTCATTGTGGGCACATATGGGATAAAGGACATC
Downstream sequence
aagcatctgTATTTGTTTTGTTGCTACACACACACACACACGTGTGTGTGTATACATTTCACCAACAATGTCCTGGCTTCATGATGTTTTTATCATCata
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate