Basic Information
VIS ID
TVIS10019056
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37.55
Start
80748566/81119250 (Hg38)
End
80748566/81119250 (Hg38)
Nearest miRNA
hsa-mir-10525/Upstream/5203981; hsa-mir-10399/Downstream/11084765;
Nearest TSS
ENST00000635602/Upstream/196891; ENST00000431501/Downstream/56258;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/199840, chr7-CpG: 25/Downstream/491815
Nearby gene
SEMA3C
Upstream sequence
TTAACCTCTAAATTAACGGTGAAAGAGAAAAGTAAATATATTATGAACTAAATTATATAGAACAAGTGTGAAATGCTTATCTGAATTAGGCCTAGTCGTA
Downstream sequence
caaaggtgggcacgacagtattaaaaaccagtaagggaaggatagatatatgtaaaataggtgaaggatggggatcaattggaggaaagcacgtcaaaag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate