Basic Information
VIS ID
TVIS10019059
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37.55
Start
34934207/35076689 (Hg38)
End
34934207/35076689 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/5119341; hsa-mir-10400/Downstream/6194359;
Nearest TSS
ENST00000518652/Upstream/292637; ENST00000474634/Downstream/158768;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1353607, chr8-CpG: 103/Downstream/158472
Nearby gene
UNC5D
Nearest cancer related gene
UNC5D(TSG, No orient)
Upstream sequence
ttaaagaataaagtttgcatttataagattgagaggaaacagaaagataacccagatatagagagtgagccctaaatctacatacaaacttcactcaaat
Downstream sequence
caagagaaacaaaaacatgtacaccaaaaaacttgttcacaaatgtttacagaaggtttgtttccaaaagctaatacgtaaaacaacacgagtatctatc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate