FAM189A2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019062
Fusion event
HBV-FAM189A2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
GRCh37.55
Start
71982474/69367558 (Hg38)
End
71982474/69367558 (Hg38)
Location type
Intron2
Target gene
FAM189A2
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-101-2/Upstream/28133723; hsa-let-7a-1/Downstream/1442417;
Nearest TSS
ENST00000422679/Upstream/38233; ENST00000645123/Downstream/3708;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/42171, chr9-CpG: 43/Downstream/44429
Upstream sequence
ccacccccacgatccagtcacctcccaccaggccccatctccaacactgggaattacatttcaacatgagatttggaagggacaattacccaaattatat
Downstream sequence
TAATTAAATATTTATGGAAAACAAGTTAATAGATTCAAGACAATTTGCTGTGTCTTTCTCTGGCATAAAGTTCGTTATGTGGAATTACAGAGAGGATTAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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