Basic Information
VIS ID
TVIS10019063
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37.55
Start
135524746/133787421 (Hg38)
End
135524746/133787421 (Hg38)
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/415758;
Nearest TSS
ENST00000439456/Upstream/160626;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/26174, None/Downstream
Nearby gene
FRG2B
Upstream sequence
gagagcactggacttggagtccgaggacctgagttcagatctgcctccaccacttaatagattctctgtgactattaagccctgtgactttgggtgaatc
Downstream sequence
tgctggttaattttgtgtcagtttgactgggctaagggatacccagatagctgataaaacataatttctgggtgtatctatcagagtgtttcagacaaga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate