Basic Information
VIS ID
TVIS10019064
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37.55
Start
34459301/34437754 (Hg38)
End
34459301/34437754 (Hg38)
Fragile sites / regions
FRA11E
Nearest miRNA
hsa-mir-210/Upstream/5960206; hsa-let-7a-2/Downstream/504083;
Nearest TSS
ENST00000527297/Upstream/79746; ENST00000528104/Downstream/1171;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/78591, chr11-CpG: 58/Downstream/864
Nearby gene
CAT
Nearest cancer related gene
CAT(TSG, No orient)
Upstream sequence
ctgggaagctgaggttgcagtgagccaggatcgtggactgcactctagcctggacaacagagtaagaccctctcaaaaaaaaaaaaGGAAGAggccaggc
Downstream sequence
gaggacgtatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaagcgatACCTTTACTTCGGTCGCCTCGGCGGCC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate