Basic Information
VIS ID
TVIS10019066
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37.55
Start
85967780/85934174 (Hg38)
End
85967780/85934174 (Hg38)
Nearest miRNA
hsa-mir-12128/Upstream/15758; hsa-mir-11401/Downstream/1900418;
Nearest TSS
ENST00000527434/Upstream/2292; ENST00000646986/Downstream/1123;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/34838, chr16-CpG: 24/Downstream/13872
Nearby gene
MIR6774
Upstream sequence
CCCTCAGCTGTTTCCATGTCTGTCTATGCTGGGAGGTAGGTGGGTCAGATACAGAAGCTCGTGGGGTTTGTGTCCCTCCCGTTCGACCTCTGGGACTCAC
Downstream sequence
ACCCAGGTTCAGAGCTGGGACGTGGGGCCCACAGCGGGTGCTCCTGCATTTGCCCTCCCCAGCTCATGGTCTAGGAAAAGGAAacaggggagggctcctt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate