Basic Information
VIS ID
TVIS10019067
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37.55
Start
57497535/59420174 (Hg38)
End
57497537/59420176 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/54020; hsa-mir-1250/Downstream/421090;
Nearest TSS
ENST00000595228/Upstream/16871; ENST00000577596/Downstream/106663;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/87390, chr17-CpG: 58/Downstream/145183
Nearby gene
LINC01476
Upstream sequence
atgcaaactcctgaaggtttacaccaaagttttcttctagttttagctctgttatttgaatccttaataaattagagttaatttttgtatgtggtgtgag
Downstream sequence
gagaggtcctccctcaccttctcatctaaatcagacaccttcccctcaccaccgttattctctatcactgtccccaagtacttctctcaatagcattgct
Target sequence
ca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate