Basic Information
VIS ID
TVIS10019071
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
55400881/54935208 (Hg38)
End
55400881/54935208 (Hg38)
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/881054; hsa-mir-101-1/Downstream/290433;
Nearest TSS
ENST00000473358/Upstream/47476; ENST00000371268/Downstream/45584;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/47553, chr1-CpG: 81/Downstream/45206
Nearby gene
TMEM61
Upstream sequence
CATGTTGACCCTCAGAAATATTTGCAGGCTCTAATCAGTGAcaataaactgtgaattttcagggaaaggattggaatattatattcttatatctatttgt
Downstream sequence
AGCCATAATTAAAGATATAAATTAAATGATGCCTGTTTTGGGTTTAATCTGAGCATGACTGGTTTTAAGTAGGAACTCTGGAACTGTTTAAACCTACTTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate