Basic Information
VIS ID
TVIS10019072
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
205732361/205763233 (Hg38)
End
205732361/205763233 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/314835; hsa-mir-1182/Downstream/711570;
Nearest TSS
ENST00000473358/Upstream/12957; ENST00000421166/Downstream/11918;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13016, chr1-CpG: 56/Downstream/11539
Nearby gene
RAB29
Upstream sequence
ctctagggggtagcagtataaacctggagaccagttggaagatattgagagatgatgattgcttgaactatggtggaaagtgcaagtgatgagaagtgat
Downstream sequence
TGCAGATGGCAAGAGGGGAGCTCAGATCACTCCTGTCTTGTCAAAGGGAGGAGGCGATAGCCTGAAACAGATCTGGGAAGAGGAAAGAGAATGAAGAGCG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate