DISP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019073
Fusion event
HBV-DISP1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
223100347/222927005 (Hg38)
End
223100436/222927094 (Hg38)
Location type
Intron2
Target gene
DISP1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-1/Upstream/2726386; hsa-mir-1182/Downstream/1329946;
Nearest TSS
ENST00000473358/Upstream/54734; ENST00000482856/Downstream/1330;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/111786, chr1-CpG: 19/Downstream/154382
Upstream sequence
GTGTGTGATTTTATATTAGGTGTTTTTAACCTGGGTCTGTTCACCCTGAAGTTGTTTGCAAAATTTTCTTTTGGCTATACATGTTTCTTGGAAGAGTCCC
Downstream sequence
ggaattaccaagctatttttttttttttttgcagaagctaaagcgtgttacattcccgctagcagtgtttaaggattccaatttctccatgtccttgaca
Target sequence
gcaaatacagaatccacaaataatgaggatcaactgtactgggagtgtagttgctgggtcatatggtagttctatgttcaatattttga
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate