Basic Information
VIS ID
TVIS10019074
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
247813279/247649977 (Hg38)
End
247813279/247649977 (Hg38)
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/447917; hsa-mir-3124/Downstream/1176400;
Nearest TSS
ENST00000473358/Upstream/9123; ENST00000283225/Downstream/23086;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/10138, chr1-CpG: 99/Downstream/207051
Nearby gene
OR13G1
Upstream sequence
GCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCTCTTTTTAATTGCTATATATTAGCTTAGAACAAGGTAC
Downstream sequence
GCTGCAGGCTGAGAGATGAGGGCAGAGGTAAGCAGGGAGTTTAATGGGTCAGAGATACTGAGGGAGGAATCAGTGGGACAGGGCCATATGGGTGCCCTGG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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