Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019075
Fusion event
HBV-ST6GAL2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q12.3
Reference genome
End
107469942/106853486 (Hg38)
Location type
Intron5
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-7153-5p ; hsa-mir-185-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-3925-5p ; hsa-mir-15b-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-125a-3p ; hsa-mir-3529-3p ; hsa-mir-552-3p
Nearest miRNA
hsa-mir-1285-2/Upstream/4421031; hsa-mir-10b/Downstream/2288004;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/9971, chr2-CpG: 196/Downstream/32411
Upstream sequence
CAAAAGTGCAGGAGCTCTGATCAGCATGGACCACTTCTTCCAAAGAATTTCCCTGCTGGCCGTTTGTAGGGGTTGTGGTAATTCTATAACCAGTAATGTC
Downstream sequence
GAAGGCTTCAAGCAAGAGGAGGTCCAGAGCTGGACGTCGAAGGATGCACAGGTATGGAGGAGAATCAGTGATTTCAAGCCAGTGGAATGCCTGGGCCCAG
Target sequence
GTAGGAAGGCAAAACAGTTCTGCCTTTGCTGTTGCATGGTCCCAGGACTGCTGAATAAATGACAAGCAATATGGATTAAAGTAAGCCTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.