Basic Information
VIS ID
TVIS10019078
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
205074550/204209827 (Hg38)
End
205074550/204209827 (Hg38)
Fragile sites / regions
FRA2I
Nearest miRNA
hsa-mir-10b/Upstream/15076716; hsa-mir-1244-1/Downstream/2573407;
Nearest TSS
ENST00000437798/Upstream/119370; ENST00000456384/Downstream/25158;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/674381, chr2-CpG: 83/Downstream/335389
Nearby gene
ICOS
Upstream sequence
ggagtggatacctggaagactgctgaaatgcctttgaggccttttccccattgtcttgtctatcagcacctggctatttttgagtcatgcaaatgtatta
Downstream sequence
ttgggggcaagcgttgaaaatctattgggtactatgctcactactgggtgaagagatcaattgtaccccaaacctcagcacccatgcaatttattcatgt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate