CNTN6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019079
Fusion event
HBV-CNTN6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
End
1094450/1052766 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Downstream/4197411;
Nearby gene
Upstream sequence
GCATGAAGTAGCCCAGTGACAAATGGGGCCTTTAGCAAACAGGGTAGCTCCCCTCCCCAACCACcaaaacaaaacaaaacaacaacaaacaaaaAACTGC
Downstream sequence
TTTCCCTCCTGCTTCACCATAGTTTACAATTCTTTAGAGAAGAGGCGCTTTGGATACTTCCCCACATAATACAGACGATATCTTTCATTTCTAATTGCCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate