hsa-mir-4659a-3p _LIHC.png
ZNF385D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019081
Fusion event
HBV-ZNF385D integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
22033829/21992337 (Hg38)
End
22033918/21992426 (Hg38)
Location type
Intronic
Target gene
ZNF385D
miRNAs that regulate target gene
hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6868-3p ; hsa-mir-627-3p ; hsa-mir-6734-3p ; hsa-mir-3667-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-2355-5p ; hsa-mir-3124-3p ; hsa-mir-5088-3p
Nearest miRNA
hsa-mir-12127/Upstream/1854696; hsa-let-7g/Downstream/3672447;
Nearest TSS
ENST00000440867/Upstream/35201; ENST00000628311/Downstream/176525;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1805873, chr3-CpG: 86/Downstream/379575
Nearby gene
ZNF385D-AS2
Upstream sequence
GGACAACGCTTTCTAAAAATCCGTAAAGGATATACAACTTTTCCCCAGTGAACAATTCTTTATGTTTTTTAATCATTGCCTGAAAAAGTACACATATTGT
Downstream sequence
GCAAAATAGCAGTTTCAAATTATATTATCATCATCCATCACagctatcatgtattcaactcttcccgtggtgcaagttactaagctctttaaatgttatc
Target sequence
TATTATCTATGTTAAACAAGATAGAAGACATACAAATAATAGATGACAGCAGCTGGAGGAGGTAGAATAACCGTTTCTGTGAGTTAGAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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