Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019084
Fusion event
HBV-TBC1D23 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
q12.2
Reference genome
End
100035955/100317111 (Hg38)
Location type
Intron16
Target gene
Nearest miRNA
hsa-let-7g/Upstream/352713; hsa-mir-12124/Downstream/3206922;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/55917, chr3-CpG: 69/Downstream/17493
Upstream sequence
acatatgtacacacacaccctccacacaccaagactaatcataatcagattgctgacaatcagaaaagagaggaaaatcttaaaaggggaaaaaaaagat
Downstream sequence
TTATAATTCTACTGTCCAGCTTATCCTAATTAAGCAATCATAACTAATATTGGTTAATATGTGTATTGAGTTAGGTAAGCAGTCATAACTAATATTGGTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.