Basic Information
VIS ID
TVIS10019085
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
143787401/144068559 (Hg38)
End
143787401/144068559 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/9630653; hsa-mir-1224/Downstream/7497317;
Nearest TSS
ENST00000440867/Upstream/94951; ENST00000482351/Downstream/1871353;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/95122, chr3-CpG: 97/Downstream/2092084
Nearby gene
DIPK2A
Upstream sequence
AATAGTACTGTAGTTGGTAGAAATGGTGTTTTAAAAGTCTGGAAAATAAATAATTCATTTTTTCTCTGCCATTTAAAATCCATCAACATCTACCACAACT
Downstream sequence
aaaCCCTCACAAAACAAAAACAAACAAACAAAATAAATATGTTGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATAGAGGTTGTTATTTTAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate