PLOD2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019086
Fusion event
HBV-PLOD2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
145873161/146155374 (Hg38)
End
145873161/146155374 (Hg38)
Location type
Intron19
Target gene
PLOD2
miRNAs that regulate target gene
hsa-mir-221-3p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-425-5p ; hsa-mir-615-3p ; hsa-mir-183-5p ; hsa-mir-1260b ; hsa-mir-136-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-let-7g/Upstream/11717468; hsa-mir-1224/Downstream/5410502;
Nearest TSS
ENST00000440867/Upstream/66559; ENST00000473817/Downstream/5617;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2181937, chr3-CpG: 97/Downstream/5269
Upstream sequence
CTTCCTCTTAACCCTCATTCCCGAACACAAACAGCTGCCTACTGAGTAGCTATTGTGATTTTCCTGTAATTATGTTTTAAGTTAAAAAATAATGTATAAA
Downstream sequence
ATTCTAGATAACTATTTTTAACTGCAATCTCAATAGCTTTGAAAATTAGTTTCATTggccaggcgcggtggctcacacctgcaatcccagcagtttggga
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate