Basic Information
VIS ID
TVIS10019087
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
p11
Reference genome
GRCh37/hg19
Start
49138058/49136041 (Hg38)
End
49138147/49136130 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/1483298; hsa-mir-1243/Downstream/3576552;
Nearest TSS
ENST00000502981/Upstream/107349; ENST00000504661/Downstream/2706870;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/149250, chr4-CpG: 24/Downstream/25310
Nearby gene
CWH43
Upstream sequence
AAAACAAAGATCAGATTCATCTGATCTTTTTAAAAAttttttaatttaatttaagtttcaggacatgtgtgcaggacgtgcaggtttgttacataggtga
Downstream sequence
tccattccattccattccattccattccattccattccattccattccattccattagtttctaatcgggtgattccaatccattccattatattcaagt
Target sequence
ccattccattccattccattccattccattccattccgttccattccattccattaaattccattccattccattccacttgggtagat
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate