ANXA3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019088
Fusion event
HBV-ANXA3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
79492150/78570996 (Hg38)
End
79492239/78571085 (Hg38)
Location type
Intron2
Target gene
ANXA3
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12113/Upstream/1995370; hsa-mir-1243/Downstream/4182252;
Nearest TSS
ENST00000502981/Upstream/17076; ENST00000505805/Downstream/25988;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/18973, chr4-CpG: 108/Downstream/204468
Upstream sequence
TCCTTCTTGCCCTGGTTTGTGGATGTCCTTGGTGGTTGCAATCAAGCAAGCTCTTATGAGGAATAATATCTGGAGAAAAGAAGAGAAGCATTTGAGAGTT
Downstream sequence
actgcagccttgaccttctgcgctcaagtggtcctcccacctcagcctcccaagtagctgggaccacacctgcacaccaccacacctggtaattttttaa
Target sequence
ATtttctttctttctttctttctttttttTTGtgagacacggtctcactctgtcacctagactacagtgcagtgacacaatcacagctc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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