Basic Information
VIS ID
TVIS10019089
Fusion event
HBV-LOC107986195 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
149901070/148979918 (Hg38)
End
149901159/148980007 (Hg38)
Location type
Intronic
Target gene
LOC107986195
Nearest miRNA
hsa-mir-12113/Upstream/1197250; hsa-mir-1305/Downstream/3509320;
Nearest TSS
ENST00000502981/Upstream/286886; ENST00000503100/Downstream/82515;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/534014, chr4-CpG: 161/Downstream/1098091
Nearby gene
LOC105377480
Upstream sequence
acttaatcttagctactttatgttaacctcagtttcctcaattgtaaaatgcaataatgacaatgctattctagtaagagtaccagagaagcaaatatgc
Downstream sequence
ACCACACAGCCAGATTTACCCCTCCCCCTCCAAAAAAAACCAAAAACAGGTGGCACAAGCCAATGTGAAGCACAAATGAGTATAGTATTCTTTTAAATAA
Target sequence
ATTTTGTTAGCAGAGTGAATTGGCTAAAGGACAGAGAGCTTAGAGGTTGGAAGACCAGAAAAAAACAAAATAAAACAAACAAAAAAACC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate