Basic Information
VIS ID
TVIS10019090
Fusion event
HBV-LINC02199 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
8851921/8851809 (Hg38)
End
8852043/8851931 (Hg38)
Location type
Intron1
Target gene
LINC02199
Nearest miRNA
hsa-mir-4277/Upstream/390810; hsa-mir-10397/Downstream/201885;
Nearest TSS
ENST00000502646/Upstream/12044; ENST00000506519/Downstream/149843;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/393649, chr5-CpG: 138/Downstream/692649
Upstream sequence
TTGCTGGTAGGAGCAGGCTGGGTGTGGAGCACTCTCGTGTTCACTTTGGTGGCAGGAGAAGACTGGGTGGGGAGCACACTTGTGAGCACTTTGGTGTTGG
Downstream sequence
GCAGGAGAAGAGAATAAACAGATAATTCTATGACTCCCATCCTCCCACCACACTCACTACCACATACCCATTAGTGCCAGGAGAGAAGGAAGGAACTCCT
Target sequence
TGAATCAGAAATTCTCCTTTTTTTGTTTTTGGAGGAAAGATTAGGGATCTGTGCCCAGGGATTGATGATAGTAAAATAAACAAACAAAATTAGTTTCTGGCAAAATTGGTTCAGATTCAATT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate