Basic Information
VIS ID
TVIS10019096
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
47817997/47850261 (Hg38)
End
47817997/47850261 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2652491; hsa-mir-10524/Downstream/4294088;
Nearest TSS
ENST00000381078/Upstream/55512; ENST00000335783/Downstream/218392;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/371906, chr6-CpG: 44/Downstream/218140
Nearby gene
PTCHD4
Upstream sequence
GAGAAGATGCACTTGACGGACAGTATCACAGAAGTTTCTAGGTAGGGCAGTAAGTCAAGCCTCAGATCGGTAGTTGGGATTTTTCTTGTtttgtttgttg
Downstream sequence
GGGAAATGGCTGAGAAAGAAAACTCTATGTGTCCAGCACTAACAGGGACTTGGGAGGAGAAACACATTACTGAGGGCATCACAGTTATTTGCTATGAAAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate