VISDB Viral Integration Site DataBase

VIS ID

TVIS10019098

Fusion event

HBV-CRPPA integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr7

Cytoband

p21.2

Reference genome

Start

End

16524408/16484783 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5093 ; hsa-mir-570-3p ; hsa-mir-4511 ; hsa-mir-875-3p ; hsa-mir-548b-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4666a-5p ; hsa-mir-5689 ; hsa-mir-4536-3p ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-338-3p ; hsa-mir-3614-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-4310 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4728-5p ; hsa-mir-4768-3p ; hsa-mir-6089 ; hsa-mir-6500-3p ; hsa-mir-6511a-5p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6849-3p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7157-5p ; hsa-mir-7977 ; hsa-mir-887-5p ; hsa-mir-940 ; hsa-mir-122-5p ; hsa-mir-1267 ; hsa-mir-129-5p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-3652 ; hsa-mir-3672 ; hsa-mir-367-5p ; hsa-mir-4294 ; hsa-mir-431-5p ; hsa-mir-4423-5p ; hsa-mir-4430 ; hsa-mir-504-3p ; hsa-mir-5691 ; hsa-mir-5698 ; hsa-mir-6501-5p ; hsa-mir-6805-3p ; hsa-mir-6864-3p ; hsa-mir-744-3p ; hsa-mir-8055 ; hsa-mir-924

Nearest miRNA

hsa-mir-339/Upstream/9417738; hsa-mir-10399/Downstream/1642437;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/63143, chr7-CpG: 34/Downstream/41844

Nearby gene

Upstream sequence

gcccaTTACCATCACTTGTGCactcattcatttaacagacatttattaagcgtctacaatgtgccaggccctggggacacagagctggagaatgtacagt

Downstream sequence

ccactattgactattaaggcctgggaacaatggagcttcttctttatttcttcaagtggatcttctgagtcttcgcagaacatcttagggctagagtaac