Basic Information
VIS ID
TVIS10019099
Fusion event
HBV-LOC102724143 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
22147959/22108341 (Hg38)
End
22147959/22108341 (Hg38)
Location type
Intronic
Target gene
LOC102724143
Nearest miRNA
hsa-mir-1183/Upstream/637195; hsa-mir-10399/Downstream/3841578;
Nearest TSS
ENST00000635602/Upstream/162257; ENST00000435127/Downstream/27731;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/24988, chr7-CpG: 90/Downstream/248079
Nearby gene
RAPGEF5
Upstream sequence
CTAATCCAAAAAGTTTCAGTTCTTTCCTCAAAAAATCCCATTCAATGAAGTCCGAAAATTAGTTCTAAGGATATCTCAATTTATGAGTGACAGCTTCTGG
Downstream sequence
GCCAGAGAAAAGACAATGCCCCACACCCACGGCCTGCCCGCACTGAAATGCCTATTCATCTCCATTTTTATCGACATCTCTTGGCTTCCAGGCCCTGTTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate