Basic Information
VIS ID
TVIS10019101
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
106116231/106475785 (Hg38)
End
106116231/106475785 (Hg38)
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/4004254; hsa-mir-10399/Downstream/8177560;
Nearest TSS
ENST00000635602/Upstream/189459; ENST00000470135/Downstream/123123;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/190576, chr7-CpG: 121/Downstream/184171
Nearby gene
CCDC71L
Upstream sequence
gaacctcggaggcggaggttgcagtgagctgatatcacaccactgcactccagcctgggcaacagaatgagactctgtcgccaaaaaaaaaaaaaaaaaa
Downstream sequence
aagagcttccaatttgtctcactgagtccacccatgaccctcttccatttttcaacaccagcaggcaaaataatcttttcaaaatctaagttatttcatt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate