Basic Information
VIS ID
TVIS10019103
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49043373/48130813 (Hg38)
End
49043373/48130813 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/5234538; hsa-mir-10400/Downstream/13583975;
Nearest TSS
ENST00000518652/Upstream/81233; ENST00000430626/Downstream/386276;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/121959, chr8-CpG: 18/Downstream/153
Nearby gene
UBE2V2
Upstream sequence
ccctccttggcctcccaaagtgctgggattacgggtgtgagccaccatgcctggccCCAAAGATTTtgtgtgtgtgtgtgtgtatatgtgtgtgtatatg
Downstream sequence
ATGAGGGTGTCAGCAGCTGCGTCAGGATGTGGCCTGAAGGAGGAGCATTTGGGAGGAGAGGGAGAGAGGCCGTGGAGTGGAGATTCAGAATAGCCTTGCT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate