Basic Information
VIS ID
TVIS10019104
Fusion event
HBV-LOC105375631 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
90309191/89296962 (Hg38)
End
90309280/89297051 (Hg38)
Location type
Intronic
Target gene
LOC105375631
Nearest miRNA
hsa-mir-12123/Upstream/9055489; hsa-mir-10400/Downstream/1908434;
Nearest TSS
ENST00000518652/Upstream/488054; ENST00000517696/Downstream/320106;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/968710, chr8-CpG: 92/Downstream/460256
Nearby gene
LOC101929709
Upstream sequence
gagtctgtctcgcttccccttgaacctaggctggtctcctgacttgctgtgactgcagaatgaaacagcagtgatgctggaccaggtgtgagcctagctc
Downstream sequence
ttagcctgggcgtggtggtgggcacctgtagtcccagctacttgggaggctgaggcaagagaatggtgtgaacctgggaggcagagcttgtagtgagccg
Target sequence
aggccgaggcgggtggatcacaaggtcaggagatcgagaccatcctggctaacacgatgaaaccctgtatctactaaaaatacaaaaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate