TRAPPC9 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019107
Fusion event
HBV-TRAPPC9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
141352719/140342620 (Hg38)
End
141352719/140342620 (Hg38)
Location type
Intron14
Fragile sites / regions
FRA8D
Target gene
TRAPPC9
miRNAs that regulate target gene
hsa-mir-30e-5p ; hsa-mir-196a-5p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-6873-5p ; hsa-mir-583
Nearest miRNA
hsa-mir-1204/Upstream/5537675; hsa-mir-10400/Downstream/389944;
Nearest TSS
ENST00000518652/Upstream/39785; ENST00000518971/Downstream/92577;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/3524, chr8-CpG: 46/Downstream/6436
Upstream sequence
gtctattgctttcacatcattctaaaatcaaaaaaaaatcttaagttgaaatgttgttaagtcaggTAATATTTGtacttatgtataaatcttccaaaac
Downstream sequence
TGTAACACAGCAATGCAGATGCATACCTTCTCCCCAGCCCAGTGAAAAATGAAATATAGCAAATCGAAGGTCCAAAGAAACCACATAAGCCATCTGGAGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate