FAM171A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019110
Fusion event
HBV-FAM171A1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15362625/15320626 (Hg38)
End
15362714/15320715 (Hg38)
Location type
Intron7
Target gene
FAM171A1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-96-5p ; hsa-mir-877-5p
Nearest miRNA
hsa-mir-1265/Upstream/883965; hsa-mir-107/Downstream/2524392;
Nearest TSS
ENST00000439456/Upstream/71919; ENST00000434386/Downstream/50344;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/107338, chr10-CpG: 133/Downstream/49705
Upstream sequence
AGCAAGGTTAATATGACAAGTAGTTCTCTGGTGCCCAACATCGACAAAGTCCAGAAAGAAACTAAGCATCAGAGATCTAGCATGGATGGGAGGGACCTGA
Downstream sequence
aagcattttcttcctgtttgttggccatgtgtatgtcttcttttgagaagtgAGATTGGCCATTTTAGACCACACAGTAAGTTTGCACATAATAACTTTC
Target sequence
atgttattttttgactttttaataatagccattctgactggtatgagatggtatctcattgtggttttgatctgcatttctctaatgat
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate