Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019111
Fusion event
HBV-MYOZ1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
Start
End
75394265/73634507 (Hg38)
Location type
Exon3
Target gene
Nearest miRNA
hsa-mir-1265/Upstream/913407; hsa-mir-107/Downstream/1917951;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/8271, chr10-CpG: 26/Downstream/13148
Upstream sequence
catgttgaccaggctgggcttgaactcctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattataagcatgagccaccatgcccagc
Downstream sequence
GCAAAACCCAAAAGACCCAAAACAAAGAAAGCTAAATCAGATTCAAGGAAAAAATGACCTGGCACTGTGGGTTCACTTTTAAAAAGGCAAAAAGTCACTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.