SH2D4B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019112
Fusion event
HBV-SH2D4B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82386723/80626967 (Hg38)
End
82386723/80626967 (Hg38)
Location type
Intron6
Fragile sites / regions
FRA10D
Target gene
SH2D4B
Nearest miRNA
hsa-mir-1265/Upstream/5074414; hsa-mir-107/Downstream/5637727;
Nearest TSS
ENST00000439456/Upstream/19668; ENST00000481537/Downstream/16029;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/90531, chr10-CpG: 149/Downstream/1247326
Upstream sequence
AGGGGCTTGGCAGAAGGGAGTCCTGGCGTAGACGGCGATCCATGCTGACTGCCTTCCTGGCTTCACCCTTTCCAAAGTCAGTGAGGGCTCCACCCCAACA
Downstream sequence
ggAGGCACAAGCACCCCATGGTGCTGAGTCATGGACTGGGGGCTGTCTGATGGAAACGGAGCCCTGATGTGAATACAGAGATAAGTCCAGAAAGGTAGAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate