Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019113
Fusion event
HBV-TRIM3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
Start
End
6472830/6451600 (Hg38)
Location type
Intron5
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-210/Upstream/2595459; hsa-let-7a-2/Downstream/783166;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/32098, chr11-CpG: 54/Downstream/4773
Nearest cancer related gene
TRIM3(TSG, No orient, 0)
Upstream sequence
tctttatattgttaaatggctgggggaaatcaaaacaatagtatttcatgacagattaaaattctacgcaattctaattttcgtgaccataaataaggtt
Downstream sequence
atggtggctcacgcctgtaatcccagcactttgggacgtggaggtgggaggattgcttgagcccaggagttcaagacaagcctgggcaacatagcaagac
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.