Basic Information
VIS ID
TVIS10019115
Fusion event
HBV-LINC02378 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
17735410/17582476 (Hg38)
End
17735410/17582476 (Hg38)
Location type
Intronic
Target gene
LINC02378
Nearest miRNA
hsa-mir-1244-3/Upstream/4666558; hsa-let-7i/Downstream/90823;
Nearest TSS
ENST00000382841/Upstream/888676; ENST00000539105/Downstream/6781;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1670876, chr12-CpG: 131/Downstream/1546915
Nearby gene
MIR3974
Upstream sequence
AGTCAGGGTGGGTTTGAAGACCTGAAGCAGGGCTGAGGGCGACCACGGGGGCTCTGCCAGAGCTTCCTGCCCTTCCCCAATGACCCATTTCTGGCTCCTC
Downstream sequence
CTGGCTGCTCTTCTTCCAGCTCCAAGCTGCCTACCAAGCCAGTGCCATTCTCTGCCACAACTGAAGTCATCTCCTTTTCTGCTGCCTCATCAGGATGGAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate