TMEM132D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019117
Fusion event
HBV-TMEM132D integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
129898833/129414288 (Hg38)
End
129898833/129414288 (Hg38)
Location type
Intron6
Fragile sites / regions
FRA12E
Target gene
TMEM132D
Nearest miRNA
hsa-let-7i/Upstream/1120110; hsa-mir-6763/Downstream/3167709;
Nearest TSS
ENST00000382841/Upstream/205687; ENST00000536512/Downstream/108475;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/110673, chr12-CpG: 23/Downstream/285708
Upstream sequence
aattcctattgtaatatacattctttaaatgtatgaaaaagttctttttaacatcctaactcttacctagttacctagttattttctctcgaactcatat
Downstream sequence
tcacttgtgcctgggaggcagaggttgaagtgagccgagatcccaccactccactccaggctgggtgacagagcgagacgccatatcaaaaaaaaaaaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate