MIPEP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019118
Fusion event
HBV-MIPEP integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
GRCh37/hg19
Start
24423402/23849263 (Hg38)
End
24423491/23849352 (Hg38)
Location type
Intron9
Target gene
MIPEP
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-4499/Upstream/3415417; hsa-mir-1267/Downstream/313064;
Nearest TSS
ENST00000623511/Upstream/88690; ENST00000439928/Downstream/20843;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/153286, chr13-CpG: 58/Downstream/39628
Upstream sequence
gcaactgctgtgaaaaacaacatggagttttctcaaaatatttaaaatagaactactatatgaaacagcaatcttacttctgggcatatatccaaaacat
Downstream sequence
TGCCATCCCTGTCACCACCTCAGACTCTTCTACAGTTTTACAAGAATTTTATGACTATTTTTTGTAAAGAATTCCATGGATCTGGACCCAGAAGTAAGGG
Target sequence
ACCATGGGCAGCATATAGGACCTCACAGCACAGCAGAGCCACAACCAGCAGAGACAGAGCTTAGATGCATTTTGAGGATTTGGCTTCAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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