Basic Information
VIS ID
TVIS10019119
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
54307230/53733095 (Hg38)
End
54307319/53733184 (Hg38)
Nearest miRNA
hsa-mir-15a/Upstream/922955; hsa-mir-1267/Downstream/578788;
Nearest TSS
ENST00000623511/Upstream/387884; ENST00000569422/Downstream/82235;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/530885, chr13-CpG: 25/Downstream/3407653
Nearby gene
LINC00558
Upstream sequence
CCAACTGCACCATCTCCATCCACAGCTTCCTTATCTGCATAGATGCTACACATAAGAACATTTTCCTCTCTCATCTAGAGACCCAAGACAGTGGGAAAGC
Downstream sequence
CTCTGATGACTGCCTAGATTACTGTGTCTCCTCTGTCTAGATTATTCCCCAGCCTCTAGCCCACCTGTTCAAAATATACAAATCCTACTCTTAAGAGATC
Target sequence
AAGGCCAGGGAGTAGAAAAGAAGACTGTGTATGTAGAATGAATCATCTTCTACTGTGCCCAGAATTAACTGATTTTCTCATGCTTCTTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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