FGF14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019121
Fusion event
HBV-FGF14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
102756227/102103877 (Hg38)
End
102756316/102103966 (Hg38)
Location type
Intron4
Target gene
FGF14
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-8068
Nearest miRNA
hsa-mir-1297/Upstream/57873; hsa-mir-1267/Downstream/5427205;
Nearest TSS
ENST00000623511/Upstream/187232; ENST00000444686/Downstream/263573;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/186752, chr13-CpG: 60/Downstream/290364
Upstream sequence
catatccaaaacattcaaatatatctttgtgttcttctacgtgtgtacatgtgtttttgtttatgttgttgttttagtggtaacaacattttacatgagt
Downstream sequence
TCACTTCCCACTGTGTTTTTGCTGTTTGCCATCCCTGCAATGCCCCTTCCCTCACTTACGCACTCCCTAAAAAAGGATATCGAGCAGGCGTGACCTAAGT
Target sequence
TGGGGACATTGGCCATGGTCATCCACCAGGTTAGTTGCAGAGGCTGAGGCTCAGTCTTATTTCTCCAACTTCCTGCTTCAGGGACCTTC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate