Basic Information
VIS ID
TVIS10019124
Fusion event
HBV-LOC105370500 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
53283797/52817079 (Hg38)
End
53283797/52817079 (Hg38)
Location type
Intronic
Target gene
LOC105370500
Nearest miRNA
hsa-mir-208a/Upstream/2517133; hsa-mir-1185-1/Downstream/1131348;
Nearest TSS
ENST00000550708/Upstream/25411; ENST00000556988/Downstream/2955;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/25178, chr14-CpG: 136/Downstream/133311
Nearby gene
FERMT2
Upstream sequence
ATGATAAACCTAATTTCCTACTTTCATTCAAAAAATTACACCCTGATATGCTAATAATCCTCTCTGAAGACAGCAGGTAAACTAGAAAATTGGGAAAAAG
Downstream sequence
cccctttggattttataagcacactgtttctgttctttaggggttactagaagtttcaacgtgcatgttaacttatcaaagtctgtagctaagcaatact
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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