Basic Information
VIS ID
TVIS10019129
Fusion event
HBV-LOC105372047 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27949437/30369471 (Hg38)
End
27949440/30369474 (Hg38)
Location type
Intronic
Target gene
LOC105372047
Nearest miRNA
hsa-mir-1-2/Upstream/70511; hsa-mir-122/Downstream/5222263;
Nearest TSS
ENST00000575820/Upstream/841168; ENST00000583089/Downstream/343801;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2191260, chr18-CpG: 128/Downstream/672049
Nearby gene
MIR302F
Upstream sequence
TTCTGGATTCATTCTGCAGGTGAGCAGAGGTAGAAAACTCGGACATGAAGATGACTTTTGGGGCACCACCAGCAGATGCCTGTGGCTGAAGCAGAAGATA
Downstream sequence
tttcagtggaattgaggtcagtctctcccctccagttgcaatagtcttgactcctactacaactatcttgaataaagtctttctcgcagattttaacagg
Target sequence
ttg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate