VISDB Viral Integration Site DataBase

VIS ID

TVIS10019132

Fusion event

HBV-ZNF516 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr18

Cytoband

q23

Reference genome

Start

End

74124932/76412976 (Hg38)

Location type

Intron5

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-432-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-489-3p ; hsa-mir-4256 ; hsa-mir-3913-3p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-4286 ; hsa-mir-6729-3p ; hsa-mir-2114-5p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-1306-5p ; hsa-mir-4699-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-1266-5p ; hsa-mir-1296-3p ; hsa-mir-1908-5p ; hsa-mir-211-3p ; hsa-mir-24-3p ; hsa-mir-3144-5p ; hsa-mir-3179 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3191-3p ; hsa-mir-3196 ; hsa-mir-3202 ; hsa-mir-3612 ; hsa-mir-3934-3p ; hsa-mir-4270 ; hsa-mir-4284 ; hsa-mir-4441 ; hsa-mir-4481 ; hsa-mir-4518 ; hsa-mir-4652-5p ; hsa-mir-4706 ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4749-5p ; hsa-mir-491-5p ; hsa-mir-5196-5p ; hsa-mir-524-3p ; hsa-mir-525-3p ; hsa-mir-650 ; hsa-mir-663a ; hsa-mir-6754-5p ; hsa-mir-6777-5p ; hsa-mir-6787-5p ; hsa-mir-6797-5p ; hsa-mir-6810-5p ; hsa-mir-6816-5p ; hsa-mir-6825-5p ; hsa-mir-6889-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-1-2/Upstream/3559594;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/10141, chr18-CpG: 179/Downstream/28307

Upstream sequence

TGGGAACATGAAACAGAATAATAAGATTTGAGAGATTTGGAAGGAATTTAACATGTTTGAAGAAAGAGAGGCTTCAGGTAAGGTGAAATACAGGAGAAAC

Downstream sequence

ACAGTGAGCCCTGCTCAGAGGCCCACTTCTCCTTAGACATGAGACACTGCACCTGCCAAGGTAATGCTGAAACCAAGGCCTCTGTGAGGAAGCGGGAAGC