Basic Information
VIS ID
TVIS10019133
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
78016213/80258330 (Hg38)
End
78016302/80258419 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/7404948;
Nearest TSS
ENST00000575820/Upstream/10784;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/10542, None/Downstream
Nearby gene
PARD6G
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
ttagggttagggttagggttagggggttagggggttagggggttagggggttagggtgagggtgagggtgagggtgagggtgagggGTAGGGGTAGGGGT
Target sequence
gtgagggtgagggttagggttagggtgagggtgagggtgagggtgagggtgagggtgagggtgagggttagggtgttagagggttaggg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate