Basic Information
VIS ID
TVIS10019134
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
GRCh37/hg19
Start
2002110/1883217 (Hg38)
End
2002199/1883306 (Hg38)
Nearest miRNA
hsa-mir-3690-1/Upstream/589225; hsa-let-7f-2/Downstream/725885;
Nearest TSS
ENST00000429181/Upstream/115870; ENST00000381180/Downstream/383631;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/222750, chrX-CpG: 18/Downstream/303414
Nearby gene
DHRSX
Upstream sequence
CTTATTGAAGATCTCATTATATAAGGAAACATACATGAAAAATTCTTATTATactatcaactgcaggaaatatacaggacagtggaacatgtgtactatg
Downstream sequence
ctgcctcagcctcccgagtagctgggattacaggcacccaccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggcca
Target sequence
agagagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaaccttcgcctcccgggttcaagcaattctc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate