Basic Information
VIS ID
TVIS10019135
Fusion event
HBV-LOC107985675 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
7942774/7974733 (Hg38)
End
7942774/7974733 (Hg38)
Location type
Intronic
Target gene
LOC107985675
Nearest miRNA
hsa-mir-3690-1/Upstream/826796; hsa-let-7f-2/Downstream/152232;
Nearest TSS
ENST00000429181/Upstream/46994; ENST00000422160/Downstream/32645;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/47166, chrX-CpG: 144/Downstream/756083
Nearby gene
PNPLA4
Upstream sequence
gagactgagtgattggcctgaagtcacacagaaagtggcacattcaggacaagagctcagatctcttgattcTATGCACTAGCCTTAGAATAGGAGGCCA
Downstream sequence
AGGTTAAAGAGGCAATTCCAAAGAAAGTATGACTTCAAAAAATTATATATAATCTATGGCCTTAATAAAATTATTAAAAGCACCTTAACATCTGTGTTCT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate