hsa-mir-6826-3p _LIHC.png
hsa-mir-6777-3p _LIHC.png
PPP1R3F _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019136
Fusion event
HBV-PPP1R3F integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
49140728/49284267 (Hg38)
End
49140728/49284267 (Hg38)
Location type
Intron3
Target gene
PPP1R3F
miRNAs that regulate target gene
hsa-mir-6826-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-520f-5p ; hsa-mir-6795-3p ; hsa-mir-6777-3p ; hsa-mir-6887-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n
Nearest miRNA
hsa-mir-1587/Upstream/1696762; hsa-let-7f-2/Downstream/718881;
Nearest TSS
ENST00000429181/Upstream/3491; ENST00000407599/Downstream/19402;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/13530, chrX-CpG: 42/Downstream/37684
Upstream sequence
gggagtttccctgcacaagctctctctttgtctgttgccattcacgtaagatgtgacttgctcctccttgccttctgtcatgattgtgaggcctccccaa
Downstream sequence
atgtgctaggttcatcctgtactctccctgccccaagcctggaaacagccatttctttcttgcttttcttttctttattttctttttctttttctttctt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate