VISDB Viral Integration Site DataBase

VIS ID

TVIS10019137

Fusion event

HBV-XIAP integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chrX

Cytoband

q25

Reference genome

Start

End

123037124/123903274 (Hg38)

Location type

Intron6

Target gene

miRNAs that regulate target gene

hsa-mir-34a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-96-5p ; hsa-mir-125b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-let-7e-5p ; hsa-mir-24-3p ; hsa-mir-4782-3p ; hsa-mir-7-5p ; hsa-mir-302a-5p ; hsa-mir-940 ; hsa-mir-3164 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-6808-5p ; hsa-mir-6820-3p ; hsa-mir-6893-5p ; hsa-mir-7844-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-616-3p ; hsa-mir-3606-5p ; hsa-mir-3668 ; hsa-mir-4517 ; hsa-mir-4796-3p ; hsa-mir-548at-5p ; hsa-mir-5583-3p ; hsa-mir-5696 ; hsa-mir-6073 ; hsa-mir-7852-3p ; hsa-mir-541-5p ; hsa-mir-3159 ; hsa-mir-30c-2-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-2392 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-34c-3p ; hsa-mir-421 ; hsa-mir-548k ; hsa-mir-1258 ; hsa-mir-3124-3p ; hsa-mir-4670-3p ; hsa-mir-4803 ; hsa-mir-548av-5p ; hsa-mir-8054 ; hsa-mir-150-3p ; hsa-mir-5579-5p ; hsa-mir-5692a ; hsa-mir-124-5p ; hsa-mir-935 ; hsa-mir-6732-3p ; hsa-mir-6507-5p ; hsa-mir-4289 ; hsa-mir-130a-3p ; hsa-mir-412-3p ; hsa-mir-584-5p ; hsa-mir-889-3p ; hsa-mir-4729 ; hsa-mir-142-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-143-3p ; hsa-mir-15b-3p ; hsa-mir-383-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-29a-5p ; hsa-mir-1292-3p ; hsa-mir-4438 ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-7159-5p ; hsa-mir-4272 ; hsa-mir-505-3p ; hsa-mir-4423-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-451b ; hsa-mir-4266 ; hsa-mir-4709-5p ; hsa-mir-6888-5p ; hsa-mir-548l ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-466 ; hsa-mir-103a-2-5p ; hsa-mir-1322 ; hsa-mir-1272 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-1305 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-3140-3p ; hsa-mir-153-5p ; hsa-mir-302f ; hsa-mir-744-3p ; hsa-mir-106a-3p ; hsa-mir-6501-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-5197-5p ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-4677-5p ; hsa-mir-4273 ; hsa-mir-7156-5p ; hsa-mir-4762-5p ; hsa-mir-34b-3p ; hsa-mir-6821-5p ; hsa-mir-4284 ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-1193 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4662a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6509-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-483-3p ; hsa-mir-508-5p ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-23a-3p ; hsa-mir-26a-1-3p ; hsa-mir-509-3p ; hsa-mir-34a-5p ; hsa-mir-186-5p

Nearest miRNA

hsa-let-7f-2/Upstream/2532221; hsa-mir-105-1/Downstream/10266104;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/42789, chrX-CpG: 71/Downstream/56799

Nearest cancer related gene

XIAP(OG, No orient, 0)

Upstream sequence

AACACTCTTGCACCACACACGAATGTTACTTCATTGGCAGGATGTTGACTAGTTCTTGCCCGATATTTCCAtttcttttctttttttttttttttttgag

Downstream sequence

acctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattataggcatgtgccaccacaccctgttaattttgtatttttagtagag