Basic Information
VIS ID
TVIS10019139
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37/hg19
Start
18401203/16289323 (Hg38)
End
18401236/16289356 (Hg38)
Nearest miRNA
hsa-mir-12120/Upstream/2810057;
Nearest TSS
ENST00000430575/Upstream/1485290; ENST00000421205/Downstream/1211602;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/832586, chrY-CpG: 21/Downstream/1228981
Nearby gene
FAM41AY1
Upstream sequence
aaagaataaccaacaaattatgattatttggacttgaaaatgaacaaagtaagcctgtcactcagagaaaataatcagtatgtgttgcaataaaatgtga
Downstream sequence
GAATGTAAACCTAATAAGCAACCACATTTTGGAGCCAAATTTCTAAATATGATTCAGTTTTACATCTATAAGCTTTACTGTACACCCAAATGAGAAATCT
Target sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaGGGGAAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate