GBP7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019140
Fusion event
HBV-GBP7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89640173/89174490 (Hg38)
End
89640241/89174558 (Hg38)
Location type
Intron10
Fragile sites / regions
FRA1D
Target gene
GBP7
Nearest miRNA
hsa-mir-101-1/Upstream/2816803; hsa-mir-11399/Downstream/4672274;
Nearest TSS
ENST00000473358/Upstream/24034; ENST00000641099/Downstream/1482;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/181569, chr1-CpG: 114/Downstream/349693
Upstream sequence
CACTTCCCCCACTATTTCTGTGAGTGCTTAGTAGGAAGTGTCAAAGAAGCTTGACAGCATTTTCTTCTAAGTGTCCCAACTCTTGGTTTTCCATTACACA
Downstream sequence
TACATATCTCTATACTTTGAAACATAGATACCATTCTAACCCATTCTTGGTCCTGATTTCTTGCAAGCCCCTCTGTGGGCAGGGTCTGGTCAGACTGTGG
Target sequence
AGCAAAGCTGAGCTCGCTGAGCTCATGTATATAGTAGTAGTAATCTTCACCTGGGAAACATTGTGTTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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